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Tag Archives: phylogenetics

Detecting branch length outliers on gene trees

February 28, 2017Blog, Programming phylogenetics, python
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One of these things is not like the others, one of these things just doesn’t belong. Phylogenetic analysis in non-model organisms is increasingly relying on many hundreds of nuclear loci. As the dataset gets large, it is tempting to rely on automated methods for churning unaligned sequence data into alignments, gene…

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Shiny App for Teaching Phylo Comparative Methods

November 30, 2015Blog phylogenetics, R, shiny, teaching
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The past three years I have been co-instructor for a graduate course at Northwestern: PSC450 “Field and Laboratory Methods in Plant Biology and Conservation.” It’s a survey-style course where first-year (Masters and Ph.D.)students are exposed to many different aspects of conservation science research. We rotate between several instructors for sections…

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